Package: TPES 1.0.0
TPES: Tumor Purity Estimation using SNVs
A bioinformatics tool for the estimation of the tumor purity from sequencing data. It uses the set of putative clonal somatic single nucleotide variants within copy number neutral segments to call tumor cellularity.
Authors:
TPES_1.0.0.tar.gz
TPES_1.0.0.zip(r-4.5)TPES_1.0.0.zip(r-4.4)TPES_1.0.0.zip(r-4.3)
TPES_1.0.0.tgz(r-4.4-any)TPES_1.0.0.tgz(r-4.3-any)
TPES_1.0.0.tar.gz(r-4.5-noble)TPES_1.0.0.tar.gz(r-4.4-noble)
TPES_1.0.0.tgz(r-4.4-emscripten)TPES_1.0.0.tgz(r-4.3-emscripten)
TPES.pdf |TPES.html✨
TPES/json (API)
| # Install 'TPES' in R: |
| install.packages('TPES', repos = c('https://l0ka.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- TCGA_A8_A0A7_maf - SNVsReadCountsFile for sample TCGA-A8-A0A7
- TCGA_A8_A0A7_ploidy - Ploidy data for sample TCGA-A8-A0A7
- TCGA_A8_A0A7_seg - SEG file (segmented data) for sample TCGA-A8-A0A7
- TCGA_HT_8564_maf - SNVsReadCountsFile for sample TCGA-HT-8564
- TCGA_HT_8564_ploidy - Ploidy data for sample TCGA-HT-8564
- TCGA_HT_8564_seg - SEG file (segmented data) for sample TCGA-HT-8564
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:cb659b3cf8. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 17 2024 |
| R-4.5-win | OK | Nov 17 2024 |
| R-4.5-linux | OK | Nov 17 2024 |
| R-4.4-win | OK | Nov 17 2024 |
| R-4.4-mac | OK | Nov 17 2024 |
| R-4.3-win | OK | Nov 17 2024 |
| R-4.3-mac | OK | Nov 17 2024 |
Exports:TPES_purityTPES_report
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| SNVsReadCountsFile for sample TCGA-A8-A0A7 | TCGA_A8_A0A7_maf |
| Ploidy data for sample TCGA-A8-A0A7 | TCGA_A8_A0A7_ploidy |
| SEG file (segmented data) for sample TCGA-A8-A0A7 | TCGA_A8_A0A7_seg |
| SNVsReadCountsFile for sample TCGA-HT-8564 | TCGA_HT_8564_maf |
| Ploidy data for sample TCGA-HT-8564 | TCGA_HT_8564_ploidy |
| SEG file (segmented data) for sample TCGA-HT-8564 | TCGA_HT_8564_seg |
| Tumor Purity Estimation using SNVs | TPES_purity |
| Tumor Purity Estimation using SNVs | TPES_report |
